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There are places in the code where we would like to provide a struct
object_id *, yet read the hash directly from the pack. Provide an
nth_packed_object_oid function that is similar to the
nth_packed_object_sha1 function.
In order to avoid a potentially invalid cast, nth_packed_object_oid
provides a variable into which to store the value, which it returns on
success; on error, it returns NULL, as nth_packed_object_sha1 does.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A crashing bug introduced in v2.11 timeframe has been found (it is
triggerable only in fast-import) and fixed.
* jk/clear-delta-base-cache-fix:
clear_delta_base_cache(): don't modify hashmap while iterating
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"git fsck" inspects loose objects more carefully now.
* jk/loose-object-fsck:
fsck: detect trailing garbage in all object types
fsck: parse loose object paths directly
sha1_file: add read_loose_object() function
t1450: test fsck of packed objects
sha1_file: fix error message for alternate objects
t1450: refactor loose-object removal
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On Thu, Jan 19, 2017 at 03:03:46PM +0100, Ulrich Spörlein wrote:
> > I suspect the patch below may fix things for you. It works around it by
> > walking over the lru list (either is fine, as they both contain all
> > entries, and since we're clearing everything, we don't care about the
> > order).
>
> Confirmed. With the patch applied, I can import the whole 55G in one go
> without any crashes or aborts. Thanks much!
Thanks. Here it is rolled up with a commit message.
-- >8 --
Subject: clear_delta_base_cache(): don't modify hashmap while iterating
Removing entries while iterating causes fast-import to
access an already-freed `struct packed_git`, leading to
various confusing errors.
What happens is that clear_delta_base_cache() drops the
whole contents of the cache by iterating over the hashmap,
calling release_delta_base_cache() on each entry. That
function removes the item from the hashmap. The hashmap code
may then shrink the table, but the hashmap_iter struct
retains an offset from the old table.
As a result, the next call to hashmap_iter_next() may claim
that the iteration is done, even though some items haven't
been visited.
The only caller of clear_delta_base_cache() is fast-import,
which wants to clear the cache because it is discarding the
packed_git struct for its temporary pack. So by failing to
remove all of the entries, we still have references to the
freed packed_git.
To make things even more confusing, this doesn't seem to
trigger with the test suite, because it depends on
complexities like the size of the hash table, which entries
got cleared, whether we try to access them before they're
evicted from the cache, etc.
So I've been able to identify the problem with large
imports like freebsd's svn import, or a fast-export of
linux.git. But nothing that would be reasonable to run as
part of the normal test suite.
We can fix this easily by iterating over the lru linked list
instead of the hashmap. They both contain the same entries,
and we can use the "safe" variant of the list iterator,
which exists for exactly this case.
Let's also add a warning to the hashmap API documentation to
reduce the chances of getting bit by this again.
Reported-by: Ulrich Spörlein <uqs@freebsd.org>
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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"git grep" has been taught to optionally recurse into submodules.
* bw/grep-recurse-submodules:
grep: search history of moved submodules
grep: enable recurse-submodules to work on <tree> objects
grep: optionally recurse into submodules
grep: add submodules as a grep source type
submodules: load gitmodules file from commit sha1
submodules: add helper to determine if a submodule is initialized
submodules: add helper to determine if a submodule is populated
real_path: canonicalize directory separators in root parts
real_path: have callers use real_pathdup and strbuf_realpath
real_path: create real_pathdup
real_path: convert real_path_internal to strbuf_realpath
real_path: resolve symlinks by hand
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A recent update to receive-pack to make it easier to drop garbage
objects made it clear that GIT_ALTERNATE_OBJECT_DIRECTORIES cannot
have a pathname with a colon in it (no surprise!), and this in turn
made it impossible to push into a repository at such a path. This
has been fixed by introducing a quoting mechanism used when
appending such a path to the colon-separated list.
* jk/quote-env-path-list-component:
t5615-alternate-env: double-quotes in file names do not work on Windows
t5547-push-quarantine: run the path separator test on Windows, too
tmp-objdir: quote paths we add to alternates
alternates: accept double-quoted paths
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When a loose tree or commit is read by fsck (or any git
program), unpack_sha1_rest() checks whether there is extra
cruft at the end of the object file, after the zlib data.
Blobs that are streamed, however, do not have this check.
For normal git operations, it's not a big deal. We know the
sha1 and size checked out, so we have the object bytes we
wanted. The trailing garbage doesn't affect what we're
trying to do.
But since the point of fsck is to find corruption or other
problems, it should be more thorough. This patch teaches its
loose-sha1 reader to detect extra bytes after the zlib
stream and complain.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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It's surprisingly hard to ask the sha1_file code to open a
_specific_ incarnation of a loose object. Most of the
functions take a sha1, and loop over the various object
types (packed versus loose) and locations (local versus
alternates) at a low level.
However, some tools like fsck need to look at a specific
file. This patch gives them a function they can use to open
the loose object at a given path.
The implementation unfortunately ends up repeating bits of
related functions, but there's not a good way around it
without some major refactoring of the whole sha1_file stack.
We need to mmap the specific file, then partially read the
zlib stream to know whether we're streaming or not, and then
finally either stream it or copy the data to a buffer.
We can do that by assembling some of the more arcane
internal sha1_file functions, but we end up having to
essentially reimplement unpack_sha1_file(), along with the
streaming bits of check_sha1_signature().
Still, most of the ugliness is contained in the new
function, and the interface is clean enough that it may be
reusable (though it seems unlikely anything but git-fsck
would care about opening a specific file).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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When we fail to open a corrupt loose object, we report an
error and mention the filename via sha1_file_name().
However, that function will always give us a path in the
local repository, whereas the corrupt object may have come
from an alternate. The result is a very misleading error
message.
Teach the open_sha1_file() and stat_sha1_file() helpers to
pass back the path they found, so that we can report it
correctly.
Note that the pointers we return go to static storage (e.g.,
from sha1_file_name()), which is slightly dangerous.
However, these helpers are static local helpers, and the
names are used for immediately generating error messages.
The simplicity is an acceptable tradeoff for the danger.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The codeflow of setting NOATIME and CLOEXEC on file descriptors Git
opens has been simplified.
We may want to drop the tip one, but we'll see.
* jc/git-open-cloexec:
sha1_file: stop opening files with O_NOATIME
git_open_cloexec(): use fcntl(2) w/ FD_CLOEXEC fallback
git_open(): untangle possible NOATIME and CLOEXEC interactions
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A recent update to receive-pack to make it easier to drop garbage
objects made it clear that GIT_ALTERNATE_OBJECT_DIRECTORIES cannot
have a pathname with a colon in it (no surprise!), and this in turn
made it impossible to push into a repository at such a path. This
has been fixed by introducing a quoting mechanism used when
appending such a path to the colon-separated list.
* jk/quote-env-path-list-component:
t5615-alternate-env: double-quotes in file names do not work on Windows
t5547-push-quarantine: run the path separator test on Windows, too
tmp-objdir: quote paths we add to alternates
alternates: accept double-quoted paths
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Migrate callers of real_path() who duplicate the retern value to use
real_pathdup or strbuf_realpath.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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We read lists of alternates from objects/info/alternates
files (delimited by newline), as well as from the
GIT_ALTERNATE_OBJECT_DIRECTORIES environment variable
(delimited by colon or semi-colon, depending on the
platform).
There's no mechanism for quoting the delimiters, so it's
impossible to specify an alternate path that contains a
colon in the environment, or one that contains a newline in
a file. We've lived with that restriction for ages because
both alternates and filenames with colons are relatively
rare, and it's only a problem when the two meet. But since
722ff7f87 (receive-pack: quarantine objects until
pre-receive accepts, 2016-10-03), which builds on the
alternates system, every push causes the receiver to set
GIT_ALTERNATE_OBJECT_DIRECTORIES internally.
It would be convenient to have some way to quote the
delimiter so that we can represent arbitrary paths.
The simplest thing would be an escape character before a
quoted delimiter (e.g., "\:" as a literal colon). But that
creates a backwards compatibility problem: any path which
uses that escape character is now broken, and we've just
shifted the problem. We could choose an unlikely escape
character (e.g., something from the non-printable ASCII
range), but that's awkward to use.
Instead, let's treat names as unquoted unless they begin
with a double-quote, in which case they are interpreted via
our usual C-stylke quoting rules. This also breaks
backwards-compatibility, but in a smaller way: it only
matters if your file has a double-quote as the very _first_
character in the path (whereas an escape character is a
problem anywhere in the path). It's also consistent with
many other parts of git, which accept either a bare pathname
or a double-quoted one, and the sender can choose to quote
or not as required.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Fix a corner-case regression in a topic that graduated during the
v2.11 cycle.
* jk/alt-odb-cleanup:
alternates: re-allow relative paths from environment
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Commit 670c359da (link_alt_odb_entry: handle normalize_path
errors, 2016-10-03) regressed the handling of relative paths
in the GIT_ALTERNATE_OBJECT_DIRECTORIES variable. It's not
entirely clear this was ever meant to work, but it _has_
worked for several years, so this commit restores the
original behavior.
When we get a path in GIT_ALTERNATE_OBJECT_DIRECTORIES, we
add it the path to the list of alternate object directories
as if it were found in objects/info/alternates, but with one
difference: we do not provide the link_alt_odb_entry()
function with a base for relative paths. That function
doesn't turn it into an absolute path, and we end up feeding
the relative path to the strbuf_normalize_path() function.
Most relative paths break out of the top-level directory
(e.g., "../foo.git/objects"), and thus normalizing fails.
Prior to 670c359da, we simply ignored the error, and due to
the way normalize_path_copy() was implemented it happened to
return the original path in this case. We then accessed the
alternate objects using this relative path.
By storing the relative path in the alt_odb list, the path
is relative to wherever we happen to be at the time we do an
object lookup. That means we look from $GIT_DIR in a bare
repository, and from the top of the worktree in a non-bare
repository.
If this were being designed from scratch, it would make
sense to pick a stable location (probably $GIT_DIR, or even
the object directory) and use that as the relative base,
turning the result into an absolute path. However, given
the history, at this point the minimal fix is to match the
pre-670c359da behavior.
We can do this simply by ignoring the error when we have no
relative base and using the original value (which we now
reliably have, thanks to strbuf_normalize_path()).
That still leaves us with a relative path that foils our
duplicate detection, and may act strangely if we ever
chdir() later in the process. We could solve that by storing
an absolute path based on getcwd(). That may be a good
future direction; for now we'll do just the minimum to fix
the regression.
The new t5615 script demonstrates the fix in its final three
tests. Since we didn't have any tests of the alternates
environment variable at all, it also adds some tests of
absolute paths.
Reported-by: Bryan Turner <bturner@atlassian.com>
Signed-off-by: Jeff King <peff@peff.net>
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When we open object files, we try to do so with O_NOATIME.
This dates back to 144bde78e9 (Use O_NOATIME when opening
the sha1 files., 2005-04-23), which is an optimization to
avoid creating a bunch of dirty inodes when we're accessing
many objects. But a few things have changed since then:
1. In June 2005, git learned about packfiles, which means
we would do a lot fewer atime updates (rather than one
per object access, we'd generally get one per packfile).
2. In late 2006, Linux learned about "relatime", which is
generally the default on modern installs. So
performance around atimes updates is a non-issue there
these days.
All the world isn't Linux, but as it turns out, Linux
is the only platform to implement O_NOATIME in the
first place.
So it's very unlikely that this code is helping anybody
these days.
Helped-by: Jeff King <peff@peff.net>
[jc: took idea and log message from peff]
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A platform might not support open(2) with O_CLOEXEC but may support
telling the same with fcntl(2) to flip FD_CLOEXEC bit on on an open
file descriptor. It is a fallback that is inherently racy and this
may not be worth doing, though.
Suggested-by: Linus Torvalds <torvalds@linux-foundation.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Git generally does not explicitly close file descriptors that were
open in the parent process when spawning a child process, but most
of the time the child does not want to access them. As Windows does
not allow removing or renaming a file that has a file descriptor
open, a slow-to-exit child can even break the parent process by
holding onto them. Use O_CLOEXEC flag to open files in various
codepaths.
* ls/git-open-cloexec:
read-cache: make sure file handles are not inherited by child processes
sha1_file: open window into packfiles with O_CLOEXEC
sha1_file: rename git_open_noatime() to git_open()
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The way we structured the fallback/retry mechanism for opening with
O_NOATIME and O_CLOEXEC meant that if we failed due to lack of
support to open the file with O_NOATIME option (i.e. EINVAL), we
would still try to drop O_CLOEXEC first and retry, and then drop
O_NOATIME. A platform on which O_NOATIME is defined in the header
without support from the kernel wouldn't have a chance to open with
O_CLOEXEC option due to this code structure.
Arguably, O_CLOEXEC is more important than O_NOATIME, as the latter
is mostly about performance, while the former can affect correctness.
Instead use O_CLOEXEC to open the file, and then use fcntl(2) to set
O_NOATIME on the resulting file descriptor. open(2) itself does not
cause atime to be updated according to Linus [*1*].
The helper to do the former can be usable in the codepath in
ce_compare_data() that was recently added to open a file descriptor
with O_CLOEXEC; use it while we are at it.
*1* <CA+55aFw83E+zOd+z5h-CA-3NhrLjVr-anL6pubrSWttYx3zu8g@mail.gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Updates the way approximate count of total objects is computed
while attempting to come up with a unique abbreviated object name,
which in turn needs to estimate how many hexdigits are necessary to
ensure uniqueness.
* jk/abbrev-auto:
find_unique_abbrev: move logic out of get_short_sha1()
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When fetching from a remote that has many tags that are irrelevant
to branches we are following, we used to waste way too many cycles
when checking if the object pointed at by a tag (that we are not
going to fetch!) exists in our repository too carefully.
* jk/fetch-quick-tag-following:
fetch: use "quick" has_sha1_file for tag following
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All processes that the Git main process spawns inherit the open file
descriptors of the main process. These leaked file descriptors can
cause problems.
Use the O_CLOEXEC flag similar to 05d1ed61 to fix the leaked file
descriptors.
Signed-off-by: Lars Schneider <larsxschneider@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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This function is meant to be used when reading from files in the
object store, and the original objective was to avoid smudging atime
of loose object files too often, hence its name. Because we'll be
extending its role in the next commit to also arrange the file
descriptors they return auto-closed in the child processes, rename
it to lose "noatime" part that is too specific.
Signed-off-by: Lars Schneider <larsxschneider@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Codepaths involved in interacting alternate object store have
been cleaned up.
* jk/alt-odb-cleanup:
alternates: use fspathcmp to detect duplicates
sha1_file: always allow relative paths to alternates
count-objects: report alternates via verbose mode
fill_sha1_file: write into a strbuf
alternates: store scratch buffer as strbuf
fill_sha1_file: write "boring" characters
alternates: use a separate scratch space
alternates: encapsulate alt->base munging
alternates: provide helper for allocating alternate
alternates: provide helper for adding to alternates list
link_alt_odb_entry: refactor string handling
link_alt_odb_entry: handle normalize_path errors
t5613: clarify "too deep" recursion tests
t5613: do not chdir in main process
t5613: whitespace/style cleanups
t5613: use test_must_fail
t5613: drop test_valid_repo function
t5613: drop reachable_via function
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When we auto-follow tags in a fetch, we look at all of the
tags advertised by the remote and fetch ones where we don't
already have the tag, but we do have the object it peels to.
This involves a lot of calls to has_sha1_file(), some of
which we can reasonably expect to fail. Since 45e8a74
(has_sha1_file: re-check pack directory before giving up,
2013-08-30), this may cause many calls to
reprepare_packed_git(), which is potentially expensive.
This has gone unnoticed for several years because it
requires a fairly unique setup to matter:
1. You need to have a lot of packs on the client side to
make reprepare_packed_git() expensive (the most
expensive part is finding duplicates in an unsorted
list, which is currently quadratic).
2. You need a large number of tag refs on the server side
that are candidates for auto-following (i.e., that the
client doesn't have). Each one triggers a re-read of
the pack directory.
3. Under normal circumstances, the client would
auto-follow those tags and after one large fetch, (2)
would no longer be true. But if those tags point to
history which is disconnected from what the client
otherwise fetches, then it will never auto-follow, and
those candidates will impact it on every fetch.
So when all three are true, each fetch pays an extra
O(nr_tags * nr_packs^2) cost, mostly in string comparisons
on the pack names. This was exacerbated by 47bf4b0
(prepare_packed_git_one: refactor duplicate-pack check,
2014-06-30) which uses a slightly more expensive string
check, under the assumption that the duplicate check doesn't
happen very often (and it shouldn't; the real problem here
is how often we are calling reprepare_packed_git()).
This patch teaches fetch to use HAS_SHA1_QUICK to sacrifice
accuracy for speed, in cases where we might be racy with a
simultaneous repack. This is similar to the fix in 0eeb077
(index-pack: avoid excessive re-reading of pack directory,
2015-06-09). As with that case, it's OK for has_sha1_file()
occasionally say "no I don't have it" when we do, because
the worst case is not a corruption, but simply that we may
fail to auto-follow a tag that points to it.
Here are results from the included perf script, which sets
up a situation similar to the one described above:
Test HEAD^ HEAD
----------------------------------------------------------
5550.4: fetch 11.21(10.42+0.78) 0.08(0.04+0.02) -99.3%
Reported-by: Vegard Nossum <vegard.nossum@oracle.com>
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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"git pack-objects" in a repository with many packfiles used to
spend a lot of time looking for/at objects in them; the accesses to
the packfiles are now optimized by checking the most-recently-used
packfile first.
* jk/pack-objects-optim-mru:
pack-objects: use mru list when iterating over packs
pack-objects: break delta cycles before delta-search phase
sha1_file: make packed_object_info public
provide an initializer for "struct object_info"
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On a case-insensitive filesystem, we should realize that
"a/objects" and "A/objects" are the same path. We already
use fspathcmp() to check against the main object directory,
but until recently we couldn't use it for comparing against
other alternates (because their paths were not
NUL-terminated strings). But now we can, so let's do so.
Note that we also need to adjust count-objects to load the
config, so that it can see the setting of core.ignorecase
(this is required by the test, but is also a general bugfix
for users of count-objects).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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We recursively expand alternates repositories, so that if A
borrows from B which borrows from C, A can see all objects.
For the root object database, we allow relative paths, so A
can point to B as "../B/objects". However, we currently do
not allow relative paths when recursing, so B must use an
absolute path to reach C.
That is an ancient protection from c2f493a (Transitively
read alternatives, 2006-05-07) that tries to avoid adding
the same alternate through two different paths. Since
5bdf0a8 (sha1_file: normalize alt_odb path before comparing
and storing, 2011-09-07), we use a normalized absolute path
for each alt_odb entry.
This means that in most cases the protection is no longer
necessary; we will detect the duplicate no matter how we got
there (but see below). And it's a good idea to get rid of
it, as it creates an unnecessary complication when setting
up recursive alternates (B has to know that A is going to
borrow from it and make sure to use an absolute path).
Note that our normalization doesn't actually look at the
filesystem, so it can still be fooled by crossing symbolic
links. But that's also true of absolute paths, so it's not a
good reason to disallow only relative paths (it's
potentially a reason to switch to real_path(), but that's a
separate and non-trivial change).
We adjust the test script here to demonstrate that this now
works, and add new tests to show that the normalization does
indeed suppress duplicates.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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It's currently the responsibility of the caller to give
fill_sha1_file() enough bytes to write into, leading them to
manually compute the required lengths. Instead, let's just
write into a strbuf so that it's impossible to get this
wrong.
The alt_odb caller already has a strbuf, so this makes
things strictly simpler. The other caller, sha1_file_name(),
uses a static PATH_MAX buffer and dies when it would
overflow. We can convert this to a static strbuf, which
means our allocation cost is amortized (and as a bonus, we
no longer have to worry about PATH_MAX being too short for
normal use).
This does introduce some small overhead in fill_sha1_file(),
as each strbuf_addchar() will check whether it needs to
grow. However, between the optimization in fec501d
(strbuf_addch: avoid calling strbuf_grow, 2015-04-16) and
the fact that this is not generally called in a tight loop
(after all, the next step is typically to access the file!)
this probably doesn't matter. And even if it did, the right
place to micro-optimize is inside fill_sha1_file(), by
calling a single strbuf_grow() there.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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We pre-size the scratch buffer to hold a loose object
filename of the form "xx/yyyy...", which leads to allocation
code that is hard to verify. We have to use some magic
numbers during the initial allocation, and then writers must
blindly assume that the buffer is big enough. Using a strbuf
makes it more clear that we cannot overflow.
Unfortunately, we do still need some magic numbers to grow
our strbuf before calling fill_sha1_path(), but the strbuf
growth is much closer to the point of use. This makes it
easier to see that it's correct, and opens the possibility
of pushing it even further down if fill_sha1_path() learns
to work on strbufs.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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This function forms a sha1 as "xx/yyyy...", but skips over
the slot for the slash rather than writing it, leaving it to
the caller to do so. It also does not bother to put in a
trailing NUL, even though every caller would want it (we're
forming a path which by definition is not a directory, so
the only thing to do with it is feed it to a system call).
Let's make the lives of our callers easier by just writing
out the internal "/" and the NUL.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The alternate_object_database struct uses a single buffer
both for storing the path to the alternate, and as a scratch
buffer for forming object names. This is efficient (since
otherwise we'd end up storing the path twice), but it makes
life hard for callers who just want to know the path to the
alternate. They have to remember to stop reading after
"alt->name - alt->base" bytes, and to subtract one for the
trailing '/'.
It would be much simpler if they could simply access a
NUL-terminated path string. We could encapsulate this in a
function which puts a NUL in the scratch buffer and returns
the string, but that opens up questions about the lifetime
of the result. The first time another caller uses the
alternate, the scratch buffer may get other data tacked onto
it.
Let's instead just store the root path separately from the
scratch buffer. There aren't enough alternates being stored
for the duplicated data to matter for performance, and this
keeps things simple and safe for the callers.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The alternate_object_database struct holds a path to the
alternate objects, but we also use that buffer as scratch
space for forming loose object filenames. Let's pull that
logic into a helper function so that we can more easily
modify it.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Allocating a struct alternate_object_database is tricky, as
we must over-allocate the buffer to provide scratch space,
and then put in particular '/' and NUL markers.
Let's encapsulate this in a function so that the complexity
doesn't leak into callers (and so that we can modify it
later).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The submodule code wants to temporarily add an alternate
object store to our in-memory alt_odb list, but does it
manually. Let's provide a helper so it can reuse the code in
link_alt_odb_entry().
While we're adding our new add_to_alternates_memory(), let's
document add_to_alternates_file(), as the two are related.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The string handling in link_alt_odb_entry() is mostly an
artifact of the original version, which took the path as a
ptr/len combo, and did not have a NUL-terminated string
until we created one in the alternate_object_database
struct. But since 5bdf0a8 (sha1_file: normalize alt_odb
path before comparing and storing, 2011-09-07), the first
thing we do is put the path into a strbuf, which gives us
some easy opportunities for cleanup.
In particular:
- we call strlen(pathbuf.buf), which is silly; we can look
at pathbuf.len.
- even though we have a strbuf, we don't maintain its
"len" field when chomping extra slashes from the
end, and instead keep a separate "pfxlen" variable. We
can fix this and then drop "pfxlen" entirely.
- we don't check whether the path is usable until after we
allocate the new struct, making extra cleanup work for
ourselves. Since we have a NUL-terminated string, we can
bump the "is it usable" checks higher in the function.
While we're at it, we can move that logic to its own
helper, which makes the flow of link_alt_odb_entry()
easier to follow.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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When we add a new alternate to the list, we try to normalize
out any redundant "..", etc. However, we do not look at the
return value of normalize_path_copy(), and will happily
continue with a path that could not be normalized. Worse,
the normalizing process is done in-place, so we are left
with whatever half-finished working state the normalizing
function was in.
Fortunately, this cannot cause us to read past the end of
our buffer, as that working state will always leave the
NUL from the original path in place. And we do tend to
notice problems when we check is_directory() on the path.
But you can see the nonsense that we feed to is_directory
with an entry like:
this/../../is/../../way/../../too/../../deep/../../to/../../resolve
in your objects/info/alternates, which yields:
error: object directory
/to/e/deep/too/way//ects/this/../../is/../../way/../../too/../../deep/../../to/../../resolve
does not exist; check .git/objects/info/alternates.
We can easily fix this just by checking the return value.
But that makes it hard to generate a good error message,
since we're normalizing in-place and our input value has
been overwritten by cruft.
Instead, let's provide a strbuf helper that does an in-place
normalize, but restores the original contents on error. This
uses a second buffer under the hood, which is slightly less
efficient, but this is not a performance-critical code path.
The strbuf helper can also properly set the "len" parameter
of the strbuf before returning. Just doing:
normalize_path_copy(buf.buf, buf.buf);
will shorten the string, but leave buf.len at the original
length. That may be confusing to later code which uses the
strbuf.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The get_short_sha1() is only about reading short sha1s; we
do call it in a loop to check "is this long enough" for each
object, but otherwise it should not need to know about
things like our default_abbrev setting.
So instead of asking it to set default_automatic_abbrev as a
side-effect, let's just have find_unique_abbrev() pick the
right place to start its loop. This requires a separate
approximate_object_count() function, but that naturally
belongs with the rest of sha1_file.c.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Codepaths that read from an on-disk loose object were too loose in
validating what they are reading is a proper object file and
sometimes read past the data they read from the disk, which has
been corrected. H/t to Gustavo Grieco for reporting.
* jc/verify-loose-object-header:
unpack_sha1_header(): detect malformed object header
streaming: make sure to notice corrupt object
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When opening a loose object file, we often do this sequence:
- prepare a short buffer for the object header (on stack)
- call unpack_sha1_header() and have early part of the object data
inflated, enough to fill the buffer
- parse that data in the short buffer, assuming that the first part
of the object is <typename> SP <length> NUL
Because the parsing function parse_sha1_header_extended() is not
given the number of bytes inflated into the header buffer, it you
craft a file whose early part inflates a garbage sequence without SP
or NUL, and replace a loose object with it, it will end up reading
past the end of the inflated data.
To correct this, do the following four things:
- rename unpack_sha1_header() to unpack_sha1_short_header() and
have unpack_sha1_header_to_strbuf() keep calling that as its
helper function. This will detect and report zlib errors, but is
not aware of the format of a loose object (as before).
- introduce unpack_sha1_header() that calls the same helper
function, and when zlib reports it inflated OK into the buffer,
check if the inflated data has NUL. This would ensure that
parsing function will terminate within the buffer that holds the
inflated header.
- update unpack_sha1_header_to_strbuf() to check if the resulting
buffer has NUL for the same effect.
- update parse_sha1_header_extended() to make sure that its loop to
find the SP that terminates the <typename> stops at NUL.
Essentially, this makes unpack_*() functions that are asked to
unpack a loose object header to be a bit more strict and detect an
input that cannot possibly be a valid object header, even before the
parsing function kicks in.
Reported-by: Gustavo Grieco <gustavo.grieco@imag.fr>
Helped-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Code cleanup.
* rs/pack-sort-with-llist-mergesort:
sha1_file: use llist_mergesort() for sorting packs
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Recently we updated the code to manage the in-core cache that holds
objects that have recently been used to reconstitute other objects
that are stored as deltas against them, but the update used an
incorrect API function to manage the list of these objects. This
has been fixed.
* jk/delta-base-cache:
add_delta_base_cache: use list_for_each_safe
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Sort the linked list of packs directly using llist_mergesort() instead
of building an array, calling qsort(3) and fixing up the list pointers.
This is shorter and less complicated.
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The "git diff --submodule={short,log}" mechanism has been enhanced
to allow "--submodule=diff" to show the patch between the submodule
commits bound to the superproject.
* jk/diff-submodule-diff-inline:
diff: teach diff to display submodule difference with an inline diff
submodule: refactor show_submodule_summary with helper function
submodule: convert show_submodule_summary to use struct object_id *
allow do_submodule_path to work even if submodule isn't checked out
diff: prepare for additional submodule formats
graph: add support for --line-prefix on all graph-aware output
diff.c: remove output_prefix_length field
cache: add empty_tree_oid object and helper function
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We may remove elements from the list while we are iterating,
which requires using a second temporary pointer. Otherwise
stepping to the next element of the list might involve
looking at freed memory (which generally works in practice,
as we _just_ freed it, but of course is wrong to rely on;
valgrind notices it).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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"git clone --resurse-submodules --reference $path $URL" is a way to
reduce network transfer cost by borrowing objects in an existing
$path repository when cloning the superproject from $URL; it
learned to also peek into $path for presense of corresponding
repositories of submodules and borrow objects from there when able.
* sb/submodule-clone-rr:
clone: recursive and reference option triggers submodule alternates
clone: implement optional references
clone: clarify option_reference as required
clone: factor out checking for an alternate path
submodule--helper update-clone: allow multiple references
submodule--helper module-clone: allow multiple references
t7408: merge short tests, factor out testing method
t7408: modernize style
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Similar to is_null_oid(), and is_empty_blob_sha1() add an
empty_tree_oid along with helper function is_empty_tree_oid(). For
completeness, also add an "is_empty_tree_sha1()",
"is_empty_blob_sha1()", "is_empty_tree_oid()" and "is_empty_blob_oid()"
helpers.
To ensure we only get one singleton, implement EMPTY_BLOB_SHA1_BIN as
simply getting the hash of empty_blob_oid structure.
Signed-off-by: Jacob Keller <jacob.keller@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The fundamental data structure of the delta base cache is a
hash table mapping pairs of "(packfile, offset)" into
structs containing the actual object data. The hash table
implementation dates back to e5e0161 (Implement a simple
delta_base cache, 2007-03-17), and uses a fixed-size table.
The current size is a hard-coded 256 entries.
Because we need to be able to remove objects from the hash
table, entry lookup does not do any kind of probing to
handle collisions. Colliding items simply replace whatever
is in their slot. As a result, we have fewer usable slots
than even the 256 we allocate. At half full, each new item
has a 50% chance of displacing another one. Or another way
to think about it: every item has a 1/256 chance of being
ejected due to hash collision, without regard to our LRU
strategy.
So it would be interesting to see the effect of increasing
the cache size on the runtime for some common operations. As
with the previous patch, we'll measure "git log --raw" for
tree-only operations, and "git log -Sfoo --raw" for
operations that touch trees and blobs. All times are
wall-clock best-of-3, done against fully packed repos with
--depth=50, and the default core.deltaBaseCacheLimit of
96MB.
Here are timings for various values of MAX_DELTA_CACHE
against git.git (the asterisk marks the minimum time for
each operation):
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ---------
256 0m02.227s 0m12.821s
512 0m02.143s 0m10.602s
1024 0m02.127s 0m08.642s
2048 0m02.148s 0m07.123s
4096 0m02.194s 0m06.448s*
8192 0m02.239s 0m06.504s
16384 0m02.144s* 0m06.502s
32768 0m02.202s 0m06.622s
65536 0m02.230s 0m06.677s
The log-raw case isn't changed much at all here (probably
because our trees just aren't that big in the first place,
or possibly because we have so _few_ trees in git.git that
the 256-entry cache is enough). But once we start putting
blobs in the cache, too, we see a big improvement (almost
50%). The curve levels off around 4096, which means that we
can hold about that many entries before hitting the 96MB
memory limit (or possibly that the workload is small enough
that there is simply no more work to be optimized out by
caching more).
(As a side note, I initially timed my existing git.git pack,
which was a base of --aggressive combined with some pulls on
top. So it had quite a few deeper delta chains. The
256-cache case was more like 15s, and it still dropped to
~6.5s in the same way).
Here are the timings for linux.git:
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ---------
256 0m41.661s 5m12.410s
512 0m39.547s 5m07.920s
1024 0m37.054s 4m54.666s
2048 0m35.871s 4m41.194s*
4096 0m34.646s 4m51.648s
8192 0m33.881s 4m55.342s
16384 0m35.190s 5m00.122s
32768 0m35.060s 4m58.851s
65536 0m33.311s* 4m51.420s
As we grow we see a nice 20% speedup in the tree traversal,
and more modest 10% in the log-S. This is probably an
indication that we are bound less by the number of entries,
and more by the memory limit (more on that below). What is
interesting is that the numbers bounce around a bit;
increasing the number of entries isn't always a strict
improvement.
Partially this is due to noise in the measurement. But it
may also be an indication that our LRU ejection scheme is
not optimal. The smaller cache sizes introduce some
randomness into the ejection (due to collisions), which may
sometimes work in our favor (and sometimes not!).
So what is the optimal setting of MAX_DELTA_CACHE? The
"bouncing" in the linux.git log-S numbers notwithstanding,
it mostly seems like bigger is better. And even if we were
to try to find a "sweet spot", these are just two
repositories, that are not necessarily representative. The
shape of history, the size of trees and blobs, the memory
limit configuration, etc, all will affect the outcome.
Rather than trying to find the "right" number, another
strategy is to just switch to a hash table that can actually
store collisions: namely our hashmap.h implementation.
Here are numbers for that compared to the "best" we saw from
adjusting MAX_DELTA_CACHE:
| log-raw | log-S
| best hashmap | best hashmap
| --------- --------- | --------- ---------
git | 0m02.144s 0m02.144s | 0m06.448s 0m06.688s
linux | 0m33.311s 0m33.092s | 4m41.194s 4m57.172s
We can see the results are similar in most cases, which is
what we'd expect. We're not ejecting due to collisions at
all, so this is purely representing the LRU. So really, we'd
expect this to model most closely the larger values of the
static MAX_DELTA_CACHE limit. And that does seem to be
what's happening, including the "bounce" in the linux log-S
case.
So while the value for that case _isn't_ as good as the
optimal one measured above (which was 2048 entries), given
the bouncing I'm hesitant to suggest that 2048 is any kind
of optimum (not even for linux.git, let alone as a general
rule). The generic hashmap has the appeal that it drops the
number of tweakable numbers by one, which means we can focus
on tuning other elements, like the LRU strategy or the
core.deltaBaseCacheLimit setting.
And indeed, if we bump the cache limit to 1G (which is
probably silly for general use, but maybe something people
with big workstations would want to do), the linux.git log-S
time drops to 3m32s. That's something you really _can't_ do
easily with the static hash table, because the number of
entries needs to grow in proportion to the memory limit (so
2048 is almost certainly not going to be the right value
there).
This patch takes that direction, and drops the static hash
table entirely in favor of using the hashmap.h API.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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When the delta base cache runs out of allowed memory, it has
to drop entries. It does so by walking an LRU list, dropping
objects until we are under the memory limit. But we actually
walk the list twice: once to drop blobs, and then again to
drop other objects (which are generally trees). This comes
from 18bdec1 (Limit the size of the new delta_base_cache,
2007-03-19).
This performs poorly as the number of entries grows, because
any time dropping blobs does not satisfy the limit, we have
to walk the _entire_ list, trees included, looking for blobs
to drop, before starting to drop any trees.
It's not generally a problem now, as the cache is limited to
only 256 entries. But as we could benefit from increasing
that in a future patch, it's worth looking at how it
performs as the cache size grows. And the answer is "not
well".
The table below shows times for various operations with
different values of MAX_DELTA_CACHE (which is not a run-time
knob; I recompiled with -DMAX_DELTA_CACHE=$n for each).
I chose "git log --raw" ("log-raw" in the table) because it
will access all of the trees, but no blobs at all (so in a
sense it is a worst case for this problem, because we will
always walk over the entire list of trees once before
realizing there are no blobs to drop). This is also
representative of other tree-only operations like "rev-list
--objects" and "git log -- <path>".
I also timed "git log -Sfoo --raw" ("log-S" in the table).
It similarly accesses all of the trees, but also the blobs
for each commit. It's representative of "git log -p", though
it emphasizes the cost of blob access more, as "-S" is
cheaper than computing an actual blob diff.
All timings are best-of-3 wall-clock times (though they all
were CPU bound, so the user CPU times are similar). The
repositories were fully packed with --depth=50, and the
default core.deltaBaseCacheLimit of 96M was in effect. The
current value of MAX_DELTA_CACHE is 256, so I started there
and worked up by factors of 2.
First, here are values for git.git (the asterisk signals the
fastest run for each operation):
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ---------
256 0m02.212s 0m12.634s
512 0m02.136s* 0m10.614s
1024 0m02.156s 0m08.614s
2048 0m02.208s 0m07.062s
4096 0m02.190s 0m06.484s*
8192 0m02.176s 0m07.635s
16384 0m02.913s 0m19.845s
32768 0m03.617s 1m05.507s
65536 0m04.031s 1m18.488s
You can see that for the tree-only log-raw case, we don't
actually benefit that much as the cache grows (all the
differences up through 8192 are basically just noise; this
is probably because we don't actually have that many
distinct trees in git.git). But for log-S, we get a definite
speed improvement as the cache grows, but the improvements
are lost as cache size grows and the linear LRU management
starts to dominate.
Here's the same thing run against linux.git:
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ----------
256 0m40.987s 5m13.216s
512 0m37.949s 5m03.243s
1024 0m35.977s 4m50.580s
2048 0m33.855s 4m39.818s
4096 0m32.913s 4m47.299s*
8192 0m32.176s* 5m14.650s
16384 0m32.185s 6m31.625s
32768 0m38.056s 9m31.136s
65536 1m30.518s 17m38.549s
The pattern is similar, though the effect in log-raw is more
pronounced here. The times dip down in the middle, and then
go back up as we keep growing.
So we know there's a problem. What's the solution?
The obvious one is to improve the data structure to avoid
walking over tree entries during the looking-for-blobs
traversal. We can do this by keeping _two_ LRU lists: one
for blobs, and one for other objects. We drop items from the
blob LRU first, and then from the tree LRU (if necessary).
Here's git.git using that strategy:
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ----------
256 0m02.264s 0m12.830s
512 0m02.201s 0m10.771s
1024 0m02.181s 0m08.593s
2048 0m02.205s 0m07.116s
4096 0m02.158s 0m06.537s*
8192 0m02.213s 0m07.246s
16384 0m02.155s* 0m10.975s
32768 0m02.159s 0m16.047s
65536 0m02.181s 0m16.992s
The upswing on log-raw is gone completely. But log-S still
has it (albeit much better than without this strategy).
Let's see what linux.git shows:
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ---------
256 0m42.519s 5m14.654s
512 0m39.106s 5m04.708s
1024 0m36.802s 4m51.454s
2048 0m34.685s 4m39.378s*
4096 0m33.663s 4m44.047s
8192 0m33.157s 4m50.644s
16384 0m33.090s* 4m49.648s
32768 0m33.458s 4m53.371s
65536 0m33.563s 5m04.580s
The results are similar. The tree-only case again performs
well (not surprising; we're literally just dropping the one
useless walk, and not otherwise changing the cache eviction
strategy at all). But the log-S case again does a bit worse
as the cache grows (though possibly that's within the noise,
which is much larger for this case).
Perhaps this is an indication that the "remove blobs first"
strategy is not actually optimal. The intent of it is to
avoid blowing out the tree cache when we see large blobs,
but it also means we'll throw away useful, recent blobs in
favor of older trees.
Let's run the same numbers without caring about object type
at all (i.e., one LRU list, and always evicting whatever is
at the head, regardless of type).
Here's git.git:
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ---------
256 0m02.227s 0m12.821s
512 0m02.143s 0m10.602s
1024 0m02.127s 0m08.642s
2048 0m02.148s 0m07.123s
4096 0m02.194s 0m06.448s*
8192 0m02.239s 0m06.504s
16384 0m02.144s* 0m06.502s
32768 0m02.202s 0m06.622s
65536 0m02.230s 0m06.677s
Much smoother; there's no dramatic upswing as we increase
the cache size (some remains, though it's small enough that
it's mostly run-to-run noise. E.g., in the log-raw case,
note how 8192 is 50-100ms higher than its neighbors). Note
also that we stop getting any real benefit for log-S after
about 4096 entries; that number will depend on the size of
the repository, the size of the blob entries, and the memory
limit of the cache.
Let's see what linux.git shows for the same strategy:
MAX_DELTA_CACHE log-raw log-S
--------------- --------- ---------
256 0m41.661s 5m12.410s
512 0m39.547s 5m07.920s
1024 0m37.054s 4m54.666s
2048 0m35.871s 4m41.194s*
4096 0m34.646s 4m51.648s
8192 0m33.881s 4m55.342s
16384 0m35.190s 5m00.122s
32768 0m35.060s 4m58.851s
65536 0m33.311s* 4m51.420s
It's similarly good. As with the "separate blob LRU"
strategy, there's a lot of noise on the log-S run here. But
it's certainly not any worse, is possibly a bit better, and
the improvement over "separate blob LRU" on the git.git case
is dramatic.
So it seems like a clear winner, and that's what this patch
implements.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
|
|
We keep an LRU list of entries for when we need to drop
something from an over-full cache. The list is implemented
as a circular doubly-linked list, which is exactly what
list.h provides. We can save a few lines by using the list.h
macros and functions. More importantly, this makes the code
easier to follow, as the reader sees explicit concepts like
"list_add_tail()" instead of pointer manipulation.
As a bonus, the list_entry() macro lets us place the lru
pointers anywhere inside the delta_base_cache_entry struct
(as opposed to just casting the pointer, which requires it
at the front of the struct). This will be useful in later
patches when we need to place other items at the front of
the struct (e.g., our hashmap implementation requires this).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
|
